Well I tried setting motor outputs as low as they would go but then AWSA quits working, apparently the motors have to be spinning for AWSA to work.
Do you know that you set (Output) Mins so that motors are off, and Neutrals so that motors spin at idle speed? If this is set, and proven to work with Test Outputs (take props off) then the problem is not the Output Min/Neutral/Max.
The other issue is depends on whether you successfully had Rx failsafe or FC failsafe working. For instance if you have a different Rx now, some Rx's don't have failsafe (Rx failsafe won't work) and some Rx's can't be set to stop sending signal during failsafe (FC failsafe won't work).
Are you using the same kind of failsafe you used before (Rx vs. FC) or were you say using FC failsafe before and Rx failsafe now, because that would do it. Motors set to always spin and the FC doesn't know that there is a failsafe.
Which ever failsafe you are using, you should make sure the throttle is as low as it will go during failsafe. That seems like the cause to me. You can connect GCS and watch what the Inputs and Outputs do when you go into failsafe. That (Input) will tell you whether the throttle stick goes all the way down.
Also, you didn't mention whether you have an arming switch. Maybe your Rx failsafe just needs to set the arming switch to disarmed if that is what you had before.