Double check your settings, i tested all PPM inputs (pin3, pin8 and PPM on FlexiPort) using the same code and a Nano board as you so i can say there is no bug in LibrePilot.
You
first select the input you want to use in Hardware tab.
Connect the hardware like the wiki pages show, according to the PPM input you choose.
https://librepilot.atlassian.net/wiki/display/LPDOC/CC+Hardware+Configuration#CCHardwareConfiguration-ReceiverPortSome posts before i recommend use the Pin8, please use this option.
When you do changes in Hardware you need to reboot the board, this means remove all power from it and reconnect again.
Next you should start the wizard and move controls when asked, at end you will get a Input tab fully configured.
When you change input type in RCInput you do not have changes in Hardware tab, that normal.
Simply because you can use mixed inputs, like one Sbus receiver connected to the board for vehicle control and additional PPM receiver for Gimbal control for example.
Edit: In your video you have ALL channels values set to 0: min/neutral/max...
If you don't use TxWizard you should set all values manually.
Manual calibration works only if activity and changes in values for min/max setup.